Jamie,

I agree with everyone here who said you have to slowly get her used to you being gone... that may take some time.
As much as she doesn't like the crate, that may be the best place for her right now while you are gone. If she is stressed with you being gone, she may be destructive in whatever room you put her in, which can be dangerous for her, as well as cause you lots of damage. I have seen people's houses where the dogs have chewed table legs, cabinets, doors, and even walls while they were away... I am not saying that she will do that, but it can happen.

Good luck.

Ditto to what Molly suggested...you might also try covering the crate with a sheet.
Erica